PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_4952.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 347aa    MW: 38746.2 Da    PI: 6.2497
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_4952.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.51.3e-49331672128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 
                   pG+rFhPtdeelv++yL++kv++k+l++ evi+e+diyk++PwdLp +++ ++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d++++s    
  MLOC_4952.1  33 LPGYRFHPTDEELVTFYLRRKVARKSLRI-EVIREMDIYKHDPWDLPkASTVGGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPIYSPaaa 129
                  69***************************.99***************445556889**************************************9888 PP

          NAM  96 .....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +g  +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  MLOC_4952.1 130 gsgsgSGVSIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 167
                  877766677***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-5431195IPR003441NAC domain
PROSITE profilePS5100553.58932196IPR003441NAC domain
PfamPF023651.7E-2434167IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MVPEAKMEKA TSDGEVVLGG PGDEEEEEED VVLPGYRFHP TDEELVTFYL RRKVARKSLR  60
IEVIREMDIY KHDPWDLPKA STVGGEKEWY FFCLRGRKYR NSIRPNRVTG SGFWKATGID  120
RPIYSPAAAG SGSGSGVSIG LKKSLVYYRG SAGKGTKTDW MMHEFRLPPA AAAPAANASP  180
SMQEAEVWTI CRIFRRTITY RKQQQQPWRP APAMSAADSS SNTGSFGSSE VGDEYMNCLQ  240
APAPAAPCIP QQQYVNQMDA VNGNNFFYRD TVHHQQFQGQ WNAAPAAPAP EEKPHDTLST  300
AASFHQNDHS HAVAANEFYK VEGYLEEIAR MMEVTDTAGF YDYRSYG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-46182021174Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3604320.0AK360432.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1118B07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981565.11e-158PREDICTED: transcription factor JUNGBRUNNEN 1
SwissprotQ9SK556e-87NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLF2D9700.0F2D970_HORVD; Predicted protein
STRINGMLOC_4952.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.16e-72NAC domain containing protein 42